July 2023 - Embrio-list - ecn.purdue.edu

Ca2+ Imaging Techniques Journal Club (Invitation)
by Perez Rosas, Norma Citlalcue 31 Jul '23

31 Jul '23

Dear Colleagues, Please join us for the Ca2+ Imaging Techniques Journal Club, a EMBRIO meeting being held during the fall semester 2023. The meeting will take place on Aug 8 from 11-12. Meeting will occur Mondays until Dec 22. The Journal Club is discussing and testing calcium imaging techniques with the aim to write a review paper. The papers we have discussed are listed here. https://docs.google.com/spreadsheets/d/1RQOTEIncii3HlRaUK38sP8EpOmAeuAc5jP6…<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> Please come and join us! Every EMBRIO member is invited to participate. P.S. By mistake I have sent a previous email with the invitation of the last semester. Please ignore that one. Best, Norma Perez ------------------------------------------------------------------------------------------------------- Norma Citlalcue Perez Rosas is inviting you to a scheduled Zoom meeting. Topic: Ca2+ Imaging Techniques - Journal Club Time: Aug 7, 2023 11:00 AM Indiana (East) Every week on Mon, until Dec 18, 2023, 20 occurrence(s) Aug 7, 2023 11:00 AM Aug 14, 2023 11:00 AM Aug 21, 2023 11:00 AM Aug 28, 2023 11:00 AM Sep 4, 2023 11:00 AM Sep 11, 2023 11:00 AM Sep 18, 2023 11:00 AM Sep 25, 2023 11:00 AM Oct 2, 2023 11:00 AM Oct 9, 2023 11:00 AM Oct 16, 2023 11:00 AM Oct 23, 2023 11:00 AM Oct 30, 2023 11:00 AM Nov 6, 2023 11:00 AM Nov 13, 2023 11:00 AM Nov 20, 2023 11:00 AM Nov 27, 2023 11:00 AM Dec 4, 2023 11:00 AM Dec 11, 2023 11:00 AM Dec 18, 2023 11:00 AM Please download and import the following iCalendar (.ics) files to your calendar system. Weekly: https://purdue-edu.zoom.us/meeting/tJYkdeChqD4uHdZfifaQWg7M6qfFz7RTkZN8/ics… Join Zoom Meeting https://purdue-edu.zoom.us/j/92929965472?pwd=VDdTbXk5TTg2eitWYmEvelB1UjkvZz…<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue-ed…> Meeting ID: 929 2996 5472 Passcode: 607686 --- One tap mobile +13092053325,,92929965472#,,,,*607686# US +13126266799,,92929965472#,,,,*607686# US (Chicago) --- Dial by your location • +1 309 205 3325 US • +1 312 626 6799 US (Chicago) • +1 646 558 8656 US (New York) • +1 646 931 3860 US • +1 301 715 8592 US (Washington DC) • +1 305 224 1968 US • +1 669 900 6833 US (San Jose) • +1 689 278 1000 US • +1 719 359 4580 US • +1 253 205 0468 US • +1 253 215 8782 US (Tacoma) • +1 346 248 7799 US (Houston) • +1 360 209 5623 US • +1 386 347 5053 US • +1 507 473 4847 US • +1 564 217 2000 US • +1 669 444 9171 US Meeting ID: 929 2996 5472 Passcode: 607686 Find your local number: https://purdue-edu.zoom.us/u/amd3SzlNE --- Join by SIP • 92929965472(a)zoomcrc.com --- Join by H.323 • 162.255.37.11 (US West) • 162.255.36.11 (US East) Meeting ID: 929 2996 5472 Passcode: 607686 ________________________________________________________________________________

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EMBRIO items this week
by Ladd, Brent Thomas 24 Jul '23

24 Jul '23

Dear EMBRIO Folk: A reminder that we'll resume EMBRIO All-hands Weekly Meetings Augutst 14th for the Fall semester at our normal time of Mondays at 3-4 PM. The Student Leadership Council has organized a mini-workshop on 3D Scientific Visualization with Blender open-source software to kick off the Fall series. An FYI that I (Brent) will be out on medical leave for a surgery this Thursday, July 27, with return Aug. 14th, so I likely won't be able to attend to EMBRIO needs until I return. Your Evaluation of Annual Retreat and Summer Workshop Please take a few minutes to provide your feedback and thoughts for those who attended the summer workshop and for those who attended the annual retreat. The surveys are optional; however, we hope you will complete them, as your input helps us to accurately report our progress and outcomes to our funder, The National Science Foundation. Annual Retreat Feedback Survey: https://purdue.ca1.qualtrics.com/jfe/form/SV_b48rlc4ikXV3hZA<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Summer Workshop at Notre Dame Survey Link: https://purdue.ca1.qualtrics.com/jfe/form/SV_do1Q7LvYpAfHqLA<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Full Workshop Agenda link: https://docs.google.com/document/d/19lXSvxCfXMeuoQ-5MHNuYpU73Qu_IrymYGXq4-t…<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> We are awaiting the recorded videos of the workshop sessions and will share these asap. Student Leadership Council Seeks New Members and Input: The budding EMBRIO Student Leadership Council is recruiting trainees interested in representing their institution and Institute Trainees. Please contact the current council officers Feyisayo Akande, David Gazzo, and Jazzmin Owens about your interest and questions in serving on this team (they are CCd here). You can view documents about the council on our shared Box account under "Student-GSO_EMBRIO": https://app.box.com/s/2hrjxu38el7rlusr3wim2t29r4q419dt<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> The Council is recruiting members from all of the EMBRIO institutions, including postdoc fellows to serve. The Council represents and promotes trainee interests as part of the EMBRIO Directors Team and incorporates ideas from all trainees into social and professional development offerings. Help Orient and Mentor Recent and New EMBRIO Trainees: For those that are interested in being a mentor to younger students inside EMBRIO to show them the inner workings of our collaborative network, please sign up here<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> and for those interested in finding a mentor please sign up here<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…>. Additionally, if anyone has any suggestions for future events that the student council can host, please fill out our suggestion "box"<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> Thanks to David Gazzo and the SLC for organizing this trainee-to-trainee mentoring space. Register for Access to the EMBRIO Image Analysis Workstation: EMBRIO Institute will acquire a dedicated workstation running IMARIS for processing and analyzing images, with local disk storage. The workstation will be available for EMBRIO research use ONLY and housed in Hall for Discovery and Learning Research (DLR) suite 203. Please indicate below that you will need access to the workstation either in person for those at Purdue, or remotely for those outside of Purdue, by filling this very short survey so that we can get you on the list for adding your ID info to the card swipe system: Quick survey for getting DLR bldg and room access to EMBRIO Image Workstation: https://purdue.ca1.qualtrics.com/jfe/form/SV_eLMmFpBZVW8TZNI<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Special IEEE Issue - Call for Submissions: There is a call for a special issue in IEEE Transactions on Molecular, Biological, and Multi-scale Communications, called "Seeing Through the Crowd: Molecular Communication in Crowded and Multi-Cellular Environments". You can find the full CFP on the T-MBMC website<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefens…>. Dr. Greg Reeves (gtreeves(a)tamu.edu) is a Guest Editor for this special issue. Manuscript Submission Deadline: 15 September 2023 Publication Date: March 2024 Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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EMBRIO End of Week Reminders
by Ladd, Brent Thomas 21 Jul '23

21 Jul '23

Dear EMBRIO Community: Please take a few minutes to provide your feedback and thoughts for those who attended the summer workshop and for those who attended the annual retreat. The surveys are optional; however, we hope you will complete them, as your input helps us to accurately report our progress and outcomes to our funder, The National Science Foundation. Annual Retreat Feedback Survey: https://purdue.ca1.qualtrics.com/jfe/form/SV_b48rlc4ikXV3hZA<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Summer Workshop at Notre Dame Survey Link: https://purdue.ca1.qualtrics.com/jfe/form/SV_do1Q7LvYpAfHqLA<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Full Workshop Agenda link: https://docs.google.com/document/d/19lXSvxCfXMeuoQ-5MHNuYpU73Qu_IrymYGXq4-t…<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> We are awaiting the recorded videos of the workshop sessions and will share these asap. Register for Access to the EMBRIO Image Analysis Workstation: EMBRIO Institute will acquire a dedicated workstation running IMARIS for processing and analyzing images, with local disk storage. The workstation will be available for EMBRIO research use ONLY and housed in Hall for Discovery and Learning Research (DLR) suite 203. Please indicate below that you will need access to the workstation either in person for those at Purdue, or remotely for those outside of Purdue, by filling this very short survey so that we can get you on the list for adding your ID info to the card swipe system: Quick survey for getting DLR bldg and room access to EMBRIO Image Workstation: https://purdue.ca1.qualtrics.com/jfe/form/SV_eLMmFpBZVW8TZNI<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Student Leadership Council Seeks New Members and Input: For those that are interested in being a mentor to younger students inside EMBRIO to show them the inner workings of our collaborative network, please sign up here<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> and for those interested in finding a mentor please sign up here<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…>.Additionally, if anyone has any suggestions for future events that the student council can host, please fill out our suggestion "box"<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> The budding EMBRIO Student Leadership Council is recruiting trainees interested in representing their institution and Institute Trainees. Please contact the current council officers Feyisayo Akande, David Gazzo, and Jazzmin Owens about your interest and questions in serving on this team (they are CCd here). You can view documents about the council on our shared Box account under "Student-GSO_EMBRIO": https://app.box.com/s/2hrjxu38el7rlusr3wim2t29r4q419dt<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> The Council is recruiting members from all of the EMBRIO institutions, including postdoc fellows to serve. The Council represents and promotes trainee interests as part of the EMBRIO Directors Team and incorporates ideas from all trainees into social and professional development offerings. Thanks everyone for considering this request to serve, Special IEEE Issue - Call for Submissions: There is a call for a special issue in IEEE Transactions on Molecular, Biological, and Multi-scale Communications, called "Seeing Through the Crowd: Molecular Communication in Crowded and Multi-Cellular Environments". You can find the full CFP on the T-MBMC website<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefens…>. Dr. Greg Reeves (gtreeves(a)tamu.edu) is a Guest Editor for this special issue. Manuscript Submission Deadline: 15 September 2023 Publication Date: March 2024 Weekly Updates Resume August 14. We will resume EMBRIO All-hands Weekly Meetings for the Fall semester at our normal time of Mondays at 3-4 PM. Starting August 14, the Student Leadership Council has organized a mini-workshop on 3D Scientific Visualization with Blender open source software. Enjoy the Weekend, Brent Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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Accessing EMBRIO Image Analysis Workstation
by Ladd, Brent Thomas 20 Jul '23

20 Jul '23

Dear EMBRIO Community: EMBRIO Institute will acquire a dedicated workstation running IMARIS for processing and analyzing images, with local disk storage. The workstation will be available for EMBRIO research use ONLY and housed in Hall for Discovery and Learning Research (DLR) suite 203. Please indicate below that you will need access to the workstation either in person for those at Purdue, or remotely for those outside of Purdue, by filling this very short survey so that we can get you on the list for adding your ID info to the card swipe system: https://purdue.ca1.qualtrics.com/jfe/form/SV_eLMmFpBZVW8TZNI<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Brent Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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EMBRIO All-Hands Retreat Feedback Survey
by Ladd, Brent Thomas 19 Jul '23

19 Jul '23

Dear EMBRO Community, It was great to see so many of us together in person last week at the annual retreat! We are gathering everyone's feedback and input on the retreat so that we can improve the next All-Hands meeting, and future events. Please take a few minutes to provide your feedback and thoughts. The survey is optional; however we hope you will complete it. Your input helps us to accurately report our progress and outcomes to our funder, The National Science Foundation. Annual Retreat Feedback Survey: https://purdue.ca1.qualtrics.com/jfe/form/SV_b48rlc4ikXV3hZA<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca…> Thank you, Brent Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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Thanks!
by Ladd, Brent Thomas 14 Jul '23

14 Jul '23

Thank you to everyone for a really wonderful exchange of research advances and insights these past two days!! A reminder that you can access presentation slide decks, abstracts, videos, and mentoring resources in the Annual Retreat 2023 folder<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…>. To all who presented posters: we've had requests to view these later, as not everyone could get around to see them all. Please upload a PDF of your poster to this Posters folder<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> Access the Competencies spreadsheets<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> and provide your input! One of us will be in touch with follow-up evaluation and feedback surveys for the retreat and workshop. Safe travels for those flying or driving home. Best, Brent Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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ABIDES workshop Slido link
by Ladd, Brent Thomas 13 Jul '23

13 Jul '23

To ask a question about mentoring anonymously: www.slido.com<https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.slido.…> You can go to slido.com and enter: #2742406, password 2r4yt0 Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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EMBRIO All-Hands Retreat next Thurs and Fri
by Ladd, Brent Thomas 12 Jul '23

12 Jul '23

EMBRIOnic Folks, Our Annual All-Hands Retreat starts next Thursday the 13th. We are greatly looking forward to having the EMBRIO Institute community together in person! Those traveling to Purdue, please see the email from me earlier today regarding your hotel, parking and transportation details. Access the Retreat Agenda<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> Posters and Lightning Talk Abstracts<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> These and other items such as poster template and presentation templates are in the main Annual Retreat 2023<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> folder. Important: Those in charge of presentations, please upload your slide deck (Box Folder<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…>) by Thursday morning ahead of your sessions. See the agenda above for who your session chair will be and work with them at the breaks to ensure your presentation is ready. As we are a large group, especially if you are new, you can view a list of EMBRIO members<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…>. (PI's let me know if we are missing anyone from the list). You may also be interested to view our slide set based on the NSF 2023 site visit<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> that provides a summary overview of our NSF Biology Integration Institute, with key outcomes, progress, challenges (as of March 1). Everyone have a great weekend, and safe travels this next week, Brent Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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Day 2 of EMBRIO Summer Workshop!
by Ladd, Brent Thomas 11 Jul '23

11 Jul '23

Day 2 of our Summer Workshop begins at 9am this morning on the beautiful Notre Dame campus featuring an in-depth module on Fundamentals of Image Processing with Dr. Krishna Jayant's Lab leading this session. The afternoon module beginning at 2:30 features Raster Image Correlation Spectroscopy (RICS) presented by Dr. Gregory Reeves. View the full schedule<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> w/ details on each session [https://lh3.googleusercontent.com/docs/AOD9vFoP8zVndPBt0DlKyOKoHyENEw-7teUc…]<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> ND EMBRIO Workshop<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…> 2nd Annual EMBRIO Summer Workshop Theme: Image Acquisition, Processing, Analysis Registration Link: https://cvent.me/04V231 Dates: July 10-12, 2023 (Trainees will have on-campus lodging July 9th - 12th) Location: University of Notre Dame (Campus map: https://map.nd.edu/) Organizer and contact:... docs.google.com For those not in person, you can access live tutorials via Zoom: Join Zoom Meeting: https://us02web.zoom.us/j/86956517473?pwd=TmFhMlpVTFJzemZWazBYcTNoOU0xQT09<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fus02web.z…> Meeting ID: 869 5651 7473 Passcode: ND2023 Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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EMBRIO Workshop and Retreat Details
by Ladd, Brent Thomas 10 Jul '23

10 Jul '23

Dear EMBRIO Community, The Summer Training Workshop focused on Image Acquisition, Processing, and Analysis starts this morning. Sessions Schedule<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.goog…>. For anyone interested who could not attend in person, there is a Zoom link you can join to view the live tutorials: Join Zoom Meeting: https://us02web.zoom.us/j/86956517473?pwd=TmFhMlpVTFJzemZWazBYcTNoOU0xQT09<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fus02web.z…> Meeting ID: 869 5651 7473 Passcode: ND2023 EMBRIO Retreat at Purdue: Our Annual All-Hands Retreat starts this Thursday the 13th. We are greatly looking forward to having the EMBRIO Institute community together in person! Those traveling to Purdue, please see the email from me last Friday regarding your hotel, parking and transportation details. Access the Retreat Agenda<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> Posters and Lightning Talk Abstracts<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> These and other items such as poster template and presentation templates are in the main Annual Retreat 2023<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> Box folder. Important: Those in charge of presentations, please upload your slide deck (Box Folder<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…>) by Thursday morning ahead of your sessions. See the agenda above for who your session chair will be and work with them at the breaks to ensure your presentation is ready. As we are a large group, especially if you are new, you can view a list of EMBRIO members<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…>. (PI's let me know if we are missing anyone from the list). You may also be interested to view our slide set based on the NSF 2023 site visit<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.c…> that provides a summary overview of our NSF Biology Integration Institute, with key outcomes, progress, challenges (as of March 1). Everyone have safe travels this week, Brent Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/> Weldon School of Biomedical Engineering Purdue University Office: Hall for Discovery Learning and Research 207 S. Martin Jischke Drive West Lafayette, IN 47907 laddb(a)purdue.edu <https://www.purdue.edu/research/embrio/>

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